SECOMO
latest
Contents:
Introduction to SECOMO: A SEquence COntext MOdeler
System setup
Tutorial
Convolutional restricted Boltzmann machine (cRBM)
Sequence-related utilies
Utils
Sample dataset
Acknowledgements
SECOMO
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Index
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Index
C
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F
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G
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L
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M
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P
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R
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S
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T
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V
C
CRBM (class in secomo)
createSeqLogo() (in module secomo.utils)
createSeqLogos() (in module secomo.utils)
F
fit() (secomo.CRBM method)
freeEnergy() (secomo.CRBM method)
G
getPFMs() (secomo.CRBM method)
L
load_sample() (in module secomo.sequences)
loadModel() (secomo.CRBM class method)
M
motifHitProbs() (secomo.CRBM method)
P
positionalDensityPlot() (in module secomo.utils)
R
readSeqsFromFasta() (in module secomo.sequences)
runTSNE() (in module secomo.utils)
S
saveModel() (secomo.CRBM method)
saveMotifs() (in module secomo.utils)
secomo (module)
secomo.sequences (module)
secomo.utils (module)
seqToOneHot() (in module secomo.sequences)
splitTrainingTest() (in module secomo.sequences)
T
tsneScatter() (in module secomo.utils)
tsneScatterWithPies() (in module secomo.utils)
V
violinPlotMotifMatches() (in module secomo.utils)
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