Index

C

CRBM (class in secomo)

createSeqLogo() (in module secomo.utils) createSeqLogos() (in module secomo.utils)

F

fit() (secomo.CRBM method)

freeEnergy() (secomo.CRBM method)

G

getPFMs() (secomo.CRBM method)

L

load_sample() (in module secomo.sequences)

loadModel() (secomo.CRBM class method)

M

motifHitProbs() (secomo.CRBM method)

P

positionalDensityPlot() (in module secomo.utils)

R

readSeqsFromFasta() (in module secomo.sequences)

runTSNE() (in module secomo.utils)

S

saveModel() (secomo.CRBM method) saveMotifs() (in module secomo.utils) secomo (module)

secomo.sequences (module) secomo.utils (module) seqToOneHot() (in module secomo.sequences) splitTrainingTest() (in module secomo.sequences)

T

tsneScatter() (in module secomo.utils)

tsneScatterWithPies() (in module secomo.utils)

V

violinPlotMotifMatches() (in module secomo.utils)